| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| gradle_dependencies.patch | Adapting gradle build files to Debian environment Coordinates of Debian libraries are indicated. Also omitting all the modules stuff. |
Pierre Gruet <pgt@debian.org> | not-needed | 2021-08-12 | ||
| skip_tests_network.patch | ignoring build-time tests that require network access Also excluding all test classes extending AbstractHeadlessTest, as this class systematically looks for data on the Internet. Vladimir Petko <vladimir.petko@canonical.com> |
Pierre Gruet <pgt@debian.org>, | not-needed | debian | 2024-03-08 | |
| using_home_made_icons.patch | using free icons to replace the non-free ones | Pierre Gruet <pgt@debian.org> | not-needed | 2021-08-23 | ||
| omit_aws_stuff.patch | patching to build without AWS support Because the Amazon SDK is not packaged, we get rid of the classes that need it. We also cannot use JWTParser, which has a non DFSG-free license. |
Pierre Gruet <pgt@debian.org> | not-needed | 2021-12-21 | ||
| wrong_override.patch | the @Override annotation is wrong because the Debian-packaged htsjdk is (at the moment) older than the one upstream relies on. | Pierre Gruet <pgt@debian.org> | not-needed | 2022-08-29 | ||
| source_target_level.patch | raising the source/target Java level so that the package can be built in a Debian environment | Pierre Gruet <pgt@debian.org> | not-needed | 2024-02-17 | ||
| opening_sealed_interface.patch | avoid using sealed interfaces as we are not using modules to allow large inheritance relationships | Pierre Gruet <pgt@debian.org> | not-needed | 2024-02-17 | ||
| no_spark.patch | spark is not packaged in Debian, omitting related tests | Pierre Gruet <pgt@debian.org> | not-needed | 2024-02-17 | ||
| omit_blat_tests.patch | skipping blat tests as their data have been removed when repacking | Pierre Gruet <pgt@debian.org> | not-needed | 2024-02-17 |