Debian Patches

Status for r-bioc-biomformat/1.26.0+dfsg-1

Patch Description Author Forwarded Bugs Origin Last update
use_debian_packaged_hdf5.patch It seems there is no need to package BioConductor rhdf5 and we wan go with r-cran-hdf5 - at least the test suite passes with this strategy Andreas Tille <> no 2016-08-22
fixme_disable_test_for_the_moment.patch This test strangely fails with: ── Error (test-accessors.R:25:1): (code run outside of `test_that()`) ──────────
Error: Both attempts to read input file:
either as JSON (BIOM-v1) or HDF5 (BIOM-v2).
Check file path, file name, file itself, then try again.

1. ├─base::suppressWarnings(read_biom(min_sparse_hdf5)) test-accessors.R:25:0
2. │ └─base::withCallingHandlers(...)
3. └─biomformat::read_biom(min_sparse_hdf5)

[ FAIL 1 | WARN 4 | SKIP 0 | PASS 26 ]

To keep on with the BioConductor transition the failure is ignored for the moment but needs to be investigated
Andreas Tille <> no 2021-09-06

All known versions for source package 'r-bioc-biomformat'