Debian Patches

Status for seqan2/2.4.0+dfsg-15

Patch Description Author Forwarded Bugs Origin Last update
skip-some-apps-on-some-archs Skip some architectures + Seqan app combinationsCould be a bug in gcc or seqan, but the memory requirements on mips{,el} to
compile three of the apps balloons beyond 14GiB, so skip them

If you update this patch (add/remove an architecture/app combo),
then update debian/README.Debian		 Michael R. Crusoe <michael.crusoe@gmail.com> no
no-unaligned-access.patch use alignment-safe buffer handling. Currently we are using assignment to copy the contents of a variable of
arbitrary type into a buffer, but this is not portable because the buffer
address may not be aligned. Use memcpy() instead, which should be
comparable performance ut alignment-safe.

===================================================================		 Steve Langasek <steve.langasek@ubuntu.com> no debian
fix-version_check-test Fixes test to work with -DSEQAN_DISABLE_VERSION_CHECK=YES Michael R. Crusoe <michael.crusoe@gmail.com> no
ctdVersion.patch [PATCH] [INTERNAL] Fix ctd output: add ctdVersion tag in header. smehringer <svenja.mehringer@fu-berlin.de> no 2018-02-12
skip-seqan-revision Don't look for a git directory, as the Debian packaging confusesthe build system Michael R. Crusoe <michael.crusoe@gmail.com> no
fix_manpage_formatting.patch [PATCH] [INTERNAL] Fixes man page output: Escape special characters '.' or ''' at the beginning of a line. smehringer <svenja.mehringer@fu-berlin.de> no 2018-02-12
spelling typo fix, interst->interest Michael R. Crusoe <michael.crusoe@gmail.com> no
ia64_yield Fix thread wait for IA64 Michael R. Crusoe <michael.crusoe@gmail.com> no
python3 python3 conversion Michael R. Crusoe <michael.crusoe@gmail.com> no
fix_python3_tests fix some string comparisons made for py2. In py3 we read bytes, not str, so
decode bytes to str before comparison.
Remove mason2 tests as upstream skip them
if gcc > 10 (in develop branch)		 Olivier Sallou <osallou@debian.org> no
tweak_readmes Update paths to their Debian equivalents Michael R. Crusoe <michael.crusoe@gmail.com> no
install_fiona_illumina Install the Illumina version of Fiona as well Michael R. Crusoe <michael.crusoe@gmail.com> no

All known versions for source package 'seqan2'

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