| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| no-unaligned-access.patch | use alignment-safe buffer handling. Currently we are using assignment to copy the contents of a variable of arbitrary type into a buffer, but this is not portable because the buffer address may not be aligned. Use memcpy() instead, which should be comparable performance ut alignment-safe. =================================================================== |
Steve Langasek <steve.langasek@ubuntu.com> | no | debian | ||
| ia64_yield | Fix thread wait for IA64 | Michael R. Crusoe <michael.crusoe@gmail.com> | no | |||
| python3 | python3 conversion | Michael R. Crusoe <michael.crusoe@gmail.com> | no | |||
| fix_python3_tests | fix some string comparisons made for py2. In py3 we read bytes, not str, so decode bytes to str before comparison. Remove mason2 tests as upstream skip them if gcc > 10 (in develop branch) |
Olivier Sallou <osallou@debian.org> | no | |||
| spelling | typo fix, interst->interest | Michael R. Crusoe <michael.crusoe@gmail.com> | no | |||
| skip-seqan-revision | Don't look for a git directory, as the Debian packaging confusesthe build system | Michael R. Crusoe <michael.crusoe@gmail.com> | no | |||
| fix-version_check-test | Fixes test to work with -DSEQAN_DISABLE_VERSION_CHECK=YES | Michael R. Crusoe <michael.crusoe@gmail.com> | no | |||
| skip-some-apps-on-some-archs | Skip some architectures + Seqan app combinationsCould be a bug in gcc or seqan, but the memory requirements on mips{,el} to compile three of the apps balloons beyond 14GiB, so skip them If you update this patch (add/remove an architecture/app combo), then update debian/README.Debian |
Michael R. Crusoe <michael.crusoe@gmail.com> | no | |||
| tweak_readmes | Update paths to their Debian equivalents | Michael R. Crusoe <michael.crusoe@gmail.com> | no | |||
| install_fiona_illumina | Install the Illumina version of Fiona as well | Michael R. Crusoe <michael.crusoe@gmail.com> | no | |||
| ctdVersion.patch | [PATCH] [INTERNAL] Fix ctd output: add ctdVersion tag in header. | smehringer <svenja.mehringer@fu-berlin.de> | no | 2018-02-12 | ||
| fix_manpage_formatting.patch | [PATCH] [INTERNAL] Fixes man page output: Escape special characters '.' or ''' at the beginning of a line. | smehringer <svenja.mehringer@fu-berlin.de> | no | 2018-02-12 |