Debian Patches

Status for toil/9.3.0-2

Patch Description Author Forwarded Bugs Origin Last update
0001-upgrade-typing.patch upgrade typing "Michael R. Crusoe" <michael.crusoe@gmail.com> not-needed upstream, https://github.com/DataBiosphere/toil/pull/5492/commits/09495c3323849cba7388e61227dbdd1f0c6c0cd0 2026-04-16
fix_tests Make tests more independent "Michael R. Crusoe" <crusoe@debian.org> yes 2025-05-05
intersphinx Link to the offline Python docs. "Michael R. Crusoe" <crusoe@debian.org> not-needed 2024-06-18
setting_version.patch Fixing version.py that is variable and required

Generated by running `python version_template.py` from a git checkout of the
source to the tag corresponding to the release

As of Toil 5.7.0 the `cwltool_version` field is set in requirements-cwl.txt, please
copy/update that field manually		 Steffen Moeller <moeller@debian.org> not-needed debian 2024-02-13
debianize_docs Update docs to reflect a local install "Michael R. Crusoe" <crusoe@debian.org> not-needed 2024-01-23
soften-mesos-deps Skip addict "Michael R. Crusoe" <crusoe@debian.org> not-needed 2025-02-13
atomic_copy_as_alternative.patch os.link does not work with debci based setup and hence default to atomic copy


when it does not work as intended		 Nilesh Patra <nilesh@debian.org> not-needed 2025-02-13
soften-cwltool-dep.patch Soften versioned dependency from cwltool Andreas Tille <tille@debian.org> not-needed 2025-02-13
accept_debian_packaged_docker_version.patch Do not force any specific docker version, just take the Debian packaged one Andreas Tille <tille@debian.org> not-needed 2025-02-13
allow_newer_requests remove max version pin for 'requests' "Michael R. Crusoe" <crusoe@debian.org> not-needed 2024-06-18

All known versions for source package 'toil'

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