| Patch | Description | Author | Forwarded | Bugs | Origin | Last update |
|---|---|---|---|---|---|---|
| fix-path-for-data.patch | Description: The upstream software is built so as to run from the build environment and look for data in ../Data. In Debian the binaries belong in /usr/bin and the data belongs in /usr/share. With this patch the binaries will run from any directory. A better fix would be to allow setting of the Data directory via an environment variable or a variable passed to MAKE at build time. This could be contributed back to upstream. |
Tim Booth <tbooth@ceh.ac.uk> | invalid | upstream | Specific to package | 2011-04-28 |
| fix-segfault-on-non-fasta-input.patch | Some apps segfault when non-FASTA data is inputted, and this is flagged as a security concern. I suspect there are still ways to segfault this app, but at least this fixes an obvious crash. Also fixes https://code.google.com/p/ampliconnoise/issues/detail?id=10 |
Tim Booth | invalid | 2013-06-27 | ||
| hardening.patch | Propagate hardening options | Andreas Tille <tille@debian.org> | invalid | |||
| clang-ftbfs.patch | Fix FTBFS with clang instead of gcc | Arthur Marble <arthur@info9.net> | invalid | debian | 2014-02-24 | |
| mayhem.patch | Fix Mayhem issues by making reading fasta files more robust | Andreas Tille <tille@debian.org> | invalid | debian | 2015-12-18 | |
| fix_sequence_of_function_definitions.patch | Fix the sequence of function definitions to make sure UpdateMinCacheForRow() is known before its first usage | Andreas Tille <tille@debian.org> | invalid | debian | 2024-04-11 | |
| fix_missing_header.patch | Add missing header file | Andreas Tille <tille@debian.org> | invalid | debian | 2024-04-11 |